Biodiversity Maintenance and Vulnerability in Food Webs with Regulatory Environmental Feedbacks. C.K. Bagdassarian, A.E. Dunham, C.G. Brown, D. Rauscher, Journal of Theoretical Biology, in review.
Evolution of Rate-Promoting Oscillations in a Model Enzyme. G.S.
Blair Williams, A.M. Hossain, D.E. Kranbuehl and C. K. Bagdassarian, Journal of Physical Chemistry B,107, 12527
(2003).
Evolution of a Catalytically Effective Model Enzyme: The
Importance of Tuned Conformational Fluctuations. G.S. Blair Williams,
A.M. Hossain, S. Shang, D.E. Kranbuehl and C. K. Bagdassarian,
Journal of Theoretical and Computational
Chemistry,2, 323 (2003).
Coupled
Genetic Algorithm/Kohonen Neural Network (GANN) for Projection of
Three-Dimensional Protein Structures Onto the Plane. K.O. Alper and C.K.
Bagdassarian, Journal of Theoretical and Computational
Chemistry, 1, 45 (2002).
Enzymatic Conformational Fluctuations Along the Reaction
Coordinate of Cytidine Deaminase. R.C. Noonan, C.W. Carter Jr., and C.K.
Bagdassarian, Protein Science, 11, 1424
(2002).
Correlated Conformational Fluctuations During Enzymatic
Catalysis: Implications for Catalytic Rate Enhancement. K.O. Alper, M.
Singla, J.L. Stone, and C.K. Bagdassarian, Protein Science,
10, 1319 (2001).
Conformational Fluctuations and Protein Function: the
Thermodynamics of a Brownian Motor. C.K. Bagdassarian and R.D. Astumian,
in Thermodynamics in Biology, ed E. Di Cera, Oxford
(2000).
Prostanoid Receptors: Subtypes and Signaling. R. M. Breyer, C. K.
Bagdassarian, S. A. Meyers, and M. D. Breyer, Ann. Rev. Pharmacology
and Toxicology, 41, 661
(2001).
Association Entropy in Adsorption Processes. N. Ben-Tal, B.
Honig, C. K. Bagdassarian, and A. Ben-Shaul, Biophys. J.
79, 1180 (2000).
Quantum
Neural Networks Can Predict Binding Free Energy for Enzymatic
Inhibitors. B. B. Braunheim, C. K. Bagdassarian, V. L. Schramm, and S.
D. Schwartz, Int. J. of Quant. Chem.,78, 195
(2000).
Synthesis of Surface-Metallized Polymeric Films by in
situ Reduction of (4,4,4-triflouro-1-(2-thienyl)-1,3-butanedionato)
silver(I) in a Polyamide Matrix. R. E. Southward, C. K. Bagdassarian, C.
J. Sudol, J. L. Wasyk, S. H. Sproul, S. T. Broadwater, J. L. Scott, and
D. W. Thompson, J. Mat. Res. 14, 2897
(1999).
Purine
Nucleoside Phosphorylase. Transition State Structure, Transition State
Inhibitors and One-Third-The-Sites Reactivity. R. W. Miles, P. C. Tyler,
R. H. Furneaux, C. K. Bagdassarian, and V. L. Schramm, in Enzymatic
Mechanisms, eds. P. A. Frey and D. B. Northrop, IOS Press
(1999).
Deamination of Nucleosides and Nucleotides and Related Reactions.
V. L. Schramm and C.K.Bagdassarian, in Comprehensive Natural
Products Chemistry, eds. Sir D. Barton, K. Nakanishi, and C. D.
Poulter, Elsevier Science, Oxford (1999).
One-Third-the-Sites Transition-State Inhibitors for Purine
Nucleoside Phosphorylase. R. W. Miles, P.C. Tyler, R. H. Furneaux, C. K.
Bagdassarian, and V. L. Schramm, Biochemistry,
37, 8615 (1998).
Pre-Steady-State Kinetic Analysis of the Reactions of Alternative
Substrates with Dialkylglycine Decarboxylase. S. Sun, C. K.
Bagdassarian, and Michael D. Toney, Biochemistry,
37, 3876 (1998).
Molecular Electrostatic Potential Analysis for Enzymatic
Substrates, Competitive Inhibitors, and Transition-State Inhibitors. C.
K. Bagdassarian, V. L. Schramm, and S. D. Schwartz, J. Am. Chem.
Soc. 118, 8825 (1996).
Quantitative Measures of Molecular Similarity: Methods to Analyze
Transition State Analogs for Enzymatic Reactions. C. K. Bagdassarian, B.
B. Braunheim, V. L. Schramm, and S. D. Schwartz, Int. J. of Quant.
Chem.: Quant. Biol. Symp.23, 1797
(1996).
Enzymatic Transition States and Inhibitor Design from Principles
of Classical and Quantum Chemsitry. V. L.Schramm, B. A. Horenstein, C.
K. Bagdassarian, S. D. Schwartz, P. Berti, K. A. Rising, J. Scheuring,
P. C. Kline, D. W. Parkin, and D. J. Merkler, Int. J. of Quant.
Chem.: Quant. Biol. Symp.23, 81 (1996).
Trypanosomal
Nucleoside Hydrolase. Resonance Raman Spectroscopy of a Transition-State
Inhibitor Complex. H. Deng, A. W.-Y. Chan, C. K. Bagdassarian, B.
Estupinan, B. Ganem, R. H. Callender, and V. L. Schramm,
Biochemistry35, 6037 (1996).
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